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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by WormBase

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Gene: let-413 WBGene00002632

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Description

PDZ domain-containing protein; Protein lap1 [Source:NCBI gene;Acc:179171]

Location

Chromosome V: 7,973,078-7,977,776 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 6 transcripts (splice variants), 339 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F26D11.11c.1	2492	706aa	F26D11.11c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1IC26	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F26D11.11d.1	2517	689aa	F26D11.11d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1IAV7	-	-
-	F26D11.11b.1	2409	699aa	F26D11.11b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O61967	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F26D11.11a.1	2177	676aa	F26D11.11a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O61967	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F26D11.11e.1	2049	682aa	F26D11.11e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1I804	-	-
-	F26D11.11f.1	2010	669aa	F26D11.11f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1I8A6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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