Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: let-413 WBGene00002632

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Description

PDZ domain-containing protein; Protein lap1 [Source:NCBI gene;Acc:179171]

Location

Chromosome V: 7,973,078-7,977,776 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 6 transcripts (splice variants), 302 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F26D11.11d.1	2517	689aa	F26D11.11d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1IAV7	-	-
-	F26D11.11c.1	2492	706aa	F26D11.11c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1IC26	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F26D11.11b.1	2409	699aa	F26D11.11b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O61967	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F26D11.11a.1	2177	676aa	F26D11.11a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O61967	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F26D11.11e.1	2049	682aa	F26D11.11e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1I804	-	-
-	F26D11.11f.1	2010	669aa	F26D11.11f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1I8A6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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