Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: sphk-1 WBGene00007918

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Description

Sphingosine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18425]

Location

Chromosome II: 8,699,045-8,702,193 reverse strand.

WBcel235:BX284602.5

About this gene

This gene has 7 transcripts (splice variants), 148 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C34C6.5a.1	1764	473aa	C34C6.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001022017	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	C34C6.5b.4	1764	423aa	C34C6.5b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001022018	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	C34C6.5c.1	1747	394aa	C34C6.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001254179	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	C34C6.5b.3	1673	423aa	C34C6.5b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001022018	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	C34C6.5b.1	1625	423aa	C34C6.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001022018	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	C34C6.5b.2	1582	423aa	C34C6.5b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001022018	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	C34C6.5d.1	1453	338aa	C34C6.5d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18425	NP_001254180

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Summary

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Gene-based displays