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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: nlp-56 WBGene00013334

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Description

Neuropeptide-Like Protein [Source:NCBI gene;Acc:3565782]

Location

Chromosome IV: 14,783,324-14,784,737 reverse strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y57G11C.45c.1	354	117aa	Y57G11C.45c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2FLM4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y57G11C.45b.2	620	114aa	Y57G11C.45b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6KRQ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y57G11C.45a.1	538	115aa	Y57G11C.45a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YTI2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y57G11C.45b.1	502	114aa	Y57G11C.45b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6KRQ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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