Summary
- Splice variants
- Transcript comparison
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Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by WormBase

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Gene: shk-1 WBGene00014261

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Description

Potassium voltage-gated channel protein shk-1 [Source:NCBI gene;Acc:174536]

Location

Chromosome II: 9,758,232-9,768,285 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 6 transcripts (splice variants), 51 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	ZK1321.2b.1	1886	524aa	ZK1321.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	ZK1321.2a.1	1764	481aa	ZK1321.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1321.2d.1	1634	501aa	ZK1321.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	-
-	ZK1321.2c.1	1611	536aa	ZK1321.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	-
-	ZK1321.2e.1	1347	448aa	ZK1321.2e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1321.2f.1	1308	435aa	ZK1321.2f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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