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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
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Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: cdh-8 WBGene00017576

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Description

CaDHerin family [Source:NCBI gene;Acc:184652]

Location

Chromosome IV: 339,808-359,293 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 9 transcripts (splice variants), 343 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F18F11.3d.1	5055	1684aa	F18F11.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PM66	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F18F11.3a.1	5373	1653aa	F18F11.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PEK5	-	-
-	F18F11.3h.1	5010	1669aa	F18F11.3h.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBR4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F18F11.3e.1	4917	1638aa	F18F11.3e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PRG1	-	-
-	F18F11.3c.1	4860	1619aa	F18F11.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBR0	-	-
-	F18F11.3g.1	4815	1604aa	F18F11.3g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBD6	-	-
-	F18F11.3b.1	4767	1588aa	F18F11.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBD1	-	-
-	F18F11.3f.1	4722	1573aa	F18F11.3f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PEL1	-	-
-	F18F11.3i.1	522	173aa	F18F11.3i.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBI3	-	-

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Summary

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