Transcript: F10C1.7a.1

Description

Intermediate filament protein ifb-2 [Source:NCBI gene;Acc:173973]

Location

Chromosome II: 5,750,190-5,754,140 forward strand.

About this transcript

This transcript has 9 exons and is annotated with 21 domains and features.

Gene

This transcript is a product of gene WBGene00002054 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F10C1.7e.1	1734	577aa	F10C1.7e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1Z854	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F10C1.7a.1	1804	543aa	F10C1.7a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19286	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F10C1.7c.1	1755	526aa	F10C1.7c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19286	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,804 bps, Translation length: 543 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q19286

Version

F10C1.7a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

EMBL-EBI User Survey 2024

Transcript: F10C1.7a.1

Summary

About Us

Get help

Our sister sites

Follow us

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: F10C1.7a.1

Summary

About Us

Get help

Our sister sites

Follow us