Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Metazoan Compara
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- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Pathway
Molecular interactions
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DB built by FlyBase

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Gene: Csp FBgn0004179

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Description

Cysteine string protein

Gene Synonyms

Location

Primary_assembly 3L: 22,267,382-22,273,745 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 77 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Csp-RF	FBtr0344983	2028	249aa	FBpp0311238	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQJ8 Q03751	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Csp-RE	FBtr0334747	2895	244aa	FBpp0306788	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG83	-	-
Csp-RA	FBtr0078493	2832	223aa	FBpp0078145	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Csp-RC	FBtr0078495	2226	228aa	FBpp0078147	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C5WLN6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Csp-RB	FBtr0078494	1842	249aa	FBpp0078146	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQJ8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Csp-RD	FBtr0334746	1498	244aa	FBpp0306787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG83	-	-

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Summary

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