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DB built by FlyBase

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Gene: Nin FBgn0000228

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Description

Ninein

Gene Synonyms

Location

Primary_assembly 2L: 5,271,728-5,278,548 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 7 transcripts (splice variants) and 45 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Nin-RG	FBtr0310625	4666	1118aa	FBpp0302745	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PC27	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nin-RB	FBtr0079084	4585	1091aa	FBpp0078718	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMS6	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Nin-RE	FBtr0302568	4549	1079aa	FBpp0291724	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2J635 M9MRD3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nin-RF	FBtr0310624	4525	1071aa	FBpp0302744	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA5 M9PB42	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nin-RC	FBtr0079085	4065	1032aa	FBpp0078719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPK8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nin-RH	FBtr0342939	3010	820aa	FBpp0309716	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P11929	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nin-RD	FBtr0302567	2514	769aa	FBpp0291723	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QPC2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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