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DB built by FlyBase

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Gene: Actn FBgn0000667

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Description

alpha actinin

Gene Synonyms

Location

Primary_assembly X: 2,023,822-2,042,311 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 9 transcripts (splice variants), 66 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Actn-RC	FBtr0070345	4868	917aa	FBpp0070331	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGA7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RF	FBtr0310657	3877	897aa	FBpp0302777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAG6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RI	FBtr0333801	3516	895aa	FBpp0305935	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS06	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Actn-RA	FBtr0070344	3511	895aa	FBpp0070330	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RB	FBtr0070343	3511	895aa	FBpp0070329	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS06	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Actn-RG	FBtr0310658	3369	917aa	FBpp0302778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGA7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RJ	FBtr0333802	3366	917aa	FBpp0305936	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGA7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RH	FBtr0310659	3351	917aa	FBpp0302779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGA7 P18091	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Actn-RD	FBtr0303048	3306	895aa	FBpp0292167	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS06	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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