Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: Rm62 FBgn0003261

.

Description

Rm62

Gene Synonyms

Location

Primary_assembly 3R: 6,000,426-6,008,579 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 12 transcripts (splice variants), 159 orthologues and 30 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rm62-RA	FBtr0078652	2995	719aa	FBpp0078301	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P19109	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Rm62-RJ	FBtr0309319	4362	458aa	FBpp0301223	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K624 I0B1P2	-	-
Rm62-RL	FBtr0309321	3793	473aa	FBpp0301225	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6A3	-	-
Rm62-RK	FBtr0309320	3683	485aa	FBpp0301224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6T7	-	-
Rm62-RM	FBtr0309322	3411	478aa	FBpp0301226	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6K1	-	-
Rm62-RE	FBtr0078653	3160	578aa	FBpp0078302	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAE4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RI	FBtr0302597	3153	578aa	FBpp0291753	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAE4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RB	FBtr0078651	3087	578aa	FBpp0078300	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RC	FBtr0078649	2849	578aa	FBpp0078298	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RF	FBtr0078654	2833	578aa	FBpp0078303	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RH	FBtr0301947	2760	575aa	FBpp0291159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ68	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rm62-RD	FBtr0078650	2757	575aa	FBpp0078299	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ68	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.