Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: sr FBgn0003499

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Description

stripe

Gene Synonyms

Location

Primary_assembly 3R: 18,090,803-18,135,583 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sr-RD	FBtr0330050	5757	1271aa	FBpp0303083	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGW2 Q24163 Q7JP26	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
sr-RE	FBtr0344633	6377	906aa	FBpp0310950	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sr-RA	FBtr0083542	5757	1186aa	FBpp0082966	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VED3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sr-RB	FBtr0083543	4543	906aa	FBpp0082967	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24163 Q7JP26 Q8IN91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sr-RC	FBtr0301615	3976	717aa	FBpp0290830	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIP0 Q6AWP1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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