Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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DB built by FlyBase

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Gene: sqh FBgn0003514

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Description

spaghetti squash

Gene Synonyms

Location

Primary_assembly X: 6,223,061-6,225,140 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 88 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sqh-RC	FBtr0339503	1403	174aa	FBpp0308587	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J1D0 P40423	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sqh-RA	FBtr0070877	1117	174aa	FBpp0070842	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J1D0 P40423	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sqh-RD	FBtr0339504	1097	174aa	FBpp0308588	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J1D0 P40423	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sqh-RB	FBtr0339502	1093	174aa	FBpp0308586	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J1D0 P40423	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
sqh-RE	FBtr0345294	1024	174aa	FBpp0311461	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J1D0 P40423	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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