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DB built by FlyBase

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Gene: Su(var)2-10 FBgn0003612

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Description

Suppressor of variegation 2-10

Gene Synonyms

Location

Primary_assembly 2R: 9,116,122-9,122,000 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 14 transcripts (splice variants), 84 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Su(var)2-10-RI	FBtr0088570	2402	640aa	FBpp0087651	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Su(var)2-10-RH	FBtr0088571	2943	569aa	FBpp0087652	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P7	-	-
Su(var)2-10-RE	FBtr0088576	2847	522aa	FBpp0087657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9XYM5	-	-
Su(var)2-10-RK	FBtr0302506	2632	537aa	FBpp0291668	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCQ7	-	-
Su(var)2-10-RG	FBtr0088575	2632	604aa	FBpp0087656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P8	-	-
Su(var)2-10-RF	FBtr0088574	2548	533aa	FBpp0087655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5BIG7	-	-
Su(var)2-10-RN	FBtr0343996	2414	577aa	FBpp0310445	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LEH9	-	-
Su(var)2-10-RC	FBtr0088573	2389	565aa	FBpp0087654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P9	-	-
Su(var)2-10-RB	FBtr0088577	2306	593aa	FBpp0087658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7Q1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Su(var)2-10-RD	FBtr0088572	2159	601aa	FBpp0087653	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGK3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Su(var)2-10-RL	FBtr0302507	2150	584aa	FBpp0291669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD33 C0PDF2 C1C3E9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Su(var)2-10-RM	FBtr0306705	2149	570aa	FBpp0297644	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6T9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Su(var)2-10-RA	FBtr0088578	2063	554aa	FBpp0087659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KNF5	-	-
Su(var)2-10-RJ	FBtr0302505	2054	537aa	FBpp0291667	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD03	-	-

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Summary

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