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DB built by FlyBase

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Gene: Taf4 FBgn0010280

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Description

TBP-associated factor 4

Gene Synonyms

Location

Primary_assembly 3L: 16,113,212-16,121,651 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 9 transcripts (splice variants) and 72 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Taf4-RE	FBtr0114589	5134	1088aa	FBpp0113081	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z060	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RH	FBtr0333291	5011	1047aa	FBpp0305486	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PI76	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RA	FBtr0075448	4916	921aa	FBpp0075205	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI11 P47825	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RG	FBtr0333290	4756	962aa	FBpp0305485	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFP3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Taf4-RF	FBtr0301911	4622	921aa	FBpp0291125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI11 P47825	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RB	FBtr0075449	4574	921aa	FBpp0075206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI11 P47825	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RC	FBtr0075450	4423	851aa	FBpp0075207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V201	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RI	FBtr0345951	4226	921aa	FBpp0311865	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI11 P47825	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Taf4-RD	FBtr0075451	4166	851aa	FBpp0089259	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V201	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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