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DB built by FlyBase

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Gene: Spn FBgn0010905

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Description

Spinophilin

Gene Synonyms

Location

Primary_assembly 3L: 2,505,245-2,554,292 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 11 transcripts (splice variants) and 63 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Spn-RJ	FBtr0304621	7376	2148aa	FBpp0293163	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFI9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Spn-RC	FBtr0304614	10136	2134aa	FBpp0293156	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEY3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RH	FBtr0304619	9544	2134aa	FBpp0293161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEY3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RI	FBtr0304620	8756	2116aa	FBpp0293162	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDX8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RD	FBtr0304615	7343	2137aa	FBpp0293157	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D1Z359 H5V864 Q8MSU5 Q9GQA3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RB	FBtr0304613	7334	2134aa	FBpp0293155	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEY3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RG	FBtr0304618	7295	2121aa	FBpp0293160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEY5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RS	FBtr0345046	7289	2119aa	FBpp0311289	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W003	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RF	FBtr0304617	6520	1684aa	FBpp0293159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND28	-	-
Spn-RT	FBtr0345047	6425	1831aa	FBpp0311290	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JC06	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spn-RE	FBtr0304616	6383	1817aa	FBpp0293158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFI2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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