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DB built by FlyBase

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Gene: Nmda1 FBgn0013305

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Description

N-methyl-D-aspartate receptor-associated protein

Gene Synonyms

Location

Primary_assembly 2R: 12,877,094-12,880,230 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 9 transcripts (splice variants), 87 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Nmda1-RD	FBtr0089875	1800	324aa	FBpp0088814	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JRM9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Nmda1-RF	FBtr0089878	2118	316aa	FBpp0088817	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95T37	-	-
Nmda1-RE	FBtr0089873	1742	324aa	FBpp0088812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JRM9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Nmda1-RB	FBtr0089874	1731	313aa	FBpp0088813	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQ30 Q7JR91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nmda1-RG	FBtr0309294	1727	313aa	FBpp0301212	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JR91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nmda1-RC	FBtr0089877	1701	324aa	FBpp0088816	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JRM9	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Nmda1-RH	FBtr0309295	1634	313aa	FBpp0301213	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JR91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nmda1-RA	FBtr0089876	1632	313aa	FBpp0088815	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JR91	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nmda1-RI	FBtr0332883	1592	316aa	FBpp0305105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95T37	-	-

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Summary

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