Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: nSyb FBgn0013342

.

Description

neuronal Synaptobrevin

Gene Synonyms

Location

Primary_assembly 3L: 1,630,348-1,637,752 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 8 transcripts (splice variants), 39 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nSyb-RJ	FBtr0331461	3411	206aa	FBpp0303878	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE71	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nSyb-RI	FBtr0306578	3570	135aa	FBpp0297533	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQJ1 Q86BQ0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nSyb-RK	FBtr0331462	3378	125aa	FBpp0303879	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDW0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nSyb-RG	FBtr0300894	3027	192aa	FBpp0290116	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0C2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nSyb-RE	FBtr0072819	1460	192aa	FBpp0089251	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0C2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nSyb-RA	FBtr0072815	1387	183aa	FBpp0072697	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0C1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nSyb-RH	FBtr0302310	1277	135aa	FBpp0291516	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BQ0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nSyb-RF	FBtr0300893	1109	183aa	FBpp0290115	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0C1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.