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DB built by FlyBase

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Gene: vri FBgn0016076

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Description

vrille

Gene Synonyms

Location

Primary_assembly 2L: 5,288,944-5,311,223 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 58 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vri-RF	FBtr0346579	4068	729aa	FBpp0312171	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O18660 Q8MZ04 Q9VMS4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vri-RE	FBtr0342936	3890	610aa	FBpp0309715	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTN9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vri-RA	FBtr0079071	3841	729aa	FBpp0078706	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMS4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vri-RD	FBtr0300020	3455	729aa	FBpp0289297	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMS4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vri-RC	FBtr0079070	3058	610aa	FBpp0078705	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTN9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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