Summary
- Splice variants
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DB built by FlyBase

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Gene: spen FBgn0016977

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Description

split ends

Gene Synonyms

Location

Primary_assembly 2L: 159,032-203,397 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 8 transcripts (splice variants), 76 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
spen-RA	FBtr0078122	17880	5560aa	FBpp0077781	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SX83	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
spen-RE	FBtr0330652	20622	5505aa	FBpp0303502	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RB	FBtr0078121	19604	5533aa	FBpp0077780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9WDZ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RG	FBtr0332336	19571	5487aa	FBpp0304613	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBJ8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RC	FBtr0078123	18859	5476aa	FBpp0077782	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RF	FBtr0330653	18434	5510aa	FBpp0303503	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDR5 Q1WWE0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RD	FBtr0306341	17963	5505aa	FBpp0297434	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spen-RH	FBtr0332337	17143	5458aa	FBpp0304614	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBZ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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