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DB built by FlyBase

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Gene: Papss FBgn0020389

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Description

PAPS synthetase

Gene Synonyms

Location

Primary_assembly 3L: 19,845,293-19,860,925 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 8 transcripts (splice variants) and 86 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Papss-RD	FBtr0074888	2457	657aa	FBpp0074657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QP52 Q8IQV1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Papss-RF	FBtr0111108	2729	630aa	FBpp0110399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RH	FBtr0332147	2686	630aa	FBpp0304457	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8 Q9VW48	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RC	FBtr0074886	2500	629aa	FBpp0074655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Papss-RG	FBtr0332146	2432	629aa	FBpp0304456	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Papss-RA	FBtr0074887	2417	629aa	FBpp0074656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Papss-RE	FBtr0074889	2396	630aa	FBpp0074658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUT8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Papss-RB	FBtr0074885	2394	629aa	FBpp0074654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961A8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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