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DB built by FlyBase

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Gene: CLIP-190 FBgn0020503

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Description

Cytoplasmic linker protein 190

Gene Synonyms

Location

Primary_assembly 2L: 17,384,700-17,409,698 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 15 transcripts (splice variants), 78 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CLIP-190-RW	FBtr0479834	6232	1795aa	FBpp0428168	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6F7UQK0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RA	FBtr0080976	5917	1690aa	FBpp0080529	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJE5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RM	FBtr0301440	5851	1668aa	FBpp0290655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHJ9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RS	FBtr0332454	5806	1653aa	FBpp0304727	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZW8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RB	FBtr0080975	5625	1689aa	FBpp0080528	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RC	FBtr0080977	5453	1652aa	FBpp0080530	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6PBX3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CLIP-190-RP	FBtr0332451	5349	1623aa	FBpp0304724	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KT48	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RN	FBtr0301441	5291	1598aa	FBpp0290656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHK0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RR	FBtr0332453	5283	1601aa	FBpp0304726	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG37	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CLIP-190-RO	FBtr0301442	2664	456aa	FBpp0290657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZW7	-	-
CLIP-190-RQ	FBtr0332452	1900	311aa	FBpp0304725	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDB4	-	-
CLIP-190-RI	FBtr0290262	1723	365aa	FBpp0288701	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8Q1	-	-
CLIP-190-RJ	FBtr0290263	1615	328aa	FBpp0288702	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8Q0	-	-
CLIP-190-RT	FBtr0332455	1549	306aa	FBpp0304728	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBC9	-	-
CLIP-190-RV	FBtr0339796	1357	327aa	FBpp0308841	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7H861 X2JAQ4	-	-

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Summary

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