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DB built by FlyBase

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Gene: Pur-alpha FBgn0022361

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Description

Purine-rich binding protein-alpha

Gene Synonyms

Location

Primary_assembly 4: 558,016-567,257 forward strand.

BDGP6.46:AE014135.4

About this gene

This gene has 7 transcripts (splice variants) and 78 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pur-alpha-RB	FBtr0089995	1319	275aa	FBpp0089038	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V4D9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pur-alpha-RE	FBtr0310638	2719	274aa	FBpp0302758	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pur-alpha-RD	FBtr0089993	2547	260aa	FBpp0089036	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMC4	-	-
Pur-alpha-RG	FBtr0310640	2544	259aa	FBpp0302760	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F3YDK4	-	-
Pur-alpha-RA	FBtr0089996	1313	274aa	FBpp0089039	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pur-alpha-RC	FBtr0089994	1238	274aa	FBpp0089037	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pur-alpha-RF	FBtr0310639	1213	275aa	FBpp0302759	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O16860 Q9V4D9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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