Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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- Gene tree (Insects)
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- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
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DB built by FlyBase

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Gene: promL FBgn0026189

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Description

prominin-like

Gene Synonyms

Location

Primary_assembly 3L: 3,114,450-3,127,724 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 91 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
promL-RB	FBtr0073118	4763	1013aa	FBpp0072980	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH44 P82295	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
promL-RD	FBtr0306258	4812	993aa	FBpp0297368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDX6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
promL-RA	FBtr0073120	4106	1013aa	FBpp0072982	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH44 P82295	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
promL-RG	FBtr0337056	4046	993aa	FBpp0307985	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDX6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
promL-RC	FBtr0073119	3828	1013aa	FBpp0072981	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH44 P82295	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
promL-RE	FBtr0333895	3491	1013aa	FBpp0306027	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH44 P82295	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
promL-RH	FBtr0479933	3377	973aa	FBpp0428265	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V897 M9PBK6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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