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DB built by FlyBase

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Gene: Hsc70Cb FBgn0026418

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Description

Hsc70Cb

Gene Synonyms

Location

Primary_assembly 3L: 14,037,019-14,043,686 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 8 transcripts (splice variants), 90 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Hsc70Cb-RG	FBtr0304036	3283	836aa	FBpp0292999	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSL3 O96818	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Hsc70Cb-RI	FBtr0333051	3590	804aa	FBpp0305265	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Hsc70Cb-RC	FBtr0075773	3292	804aa	FBpp0075515	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Hsc70Cb-RH	FBtr0304037	3258	836aa	FBpp0293000	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSL3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Hsc70Cb-RA	FBtr0075771	3187	804aa	FBpp0075513	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Hsc70Cb-RE	FBtr0304034	3184	804aa	FBpp0292997	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1 Q9XZT5	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Hsc70Cb-RB	FBtr0075772	3162	804aa	FBpp0075514	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Hsc70Cb-RF	FBtr0304035	3159	804aa	FBpp0292998	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VUC1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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