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DB built by FlyBase

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Gene: Fmr1 FBgn0028734

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Description

Fmr1

Gene Synonyms

Location

Primary_assembly 3R: 10,101,420-10,110,121 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 11 transcripts (splice variants) and 80 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Fmr1-RG	FBtr0308123	4426	729aa	FBpp0300445	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K618	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Fmr1-RC	FBtr0082198	4426	681aa	FBpp0081676	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUS7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fmr1-RE	FBtr0082200	3920	643aa	FBpp0081678	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Fmr1-RF	FBtr0301386	3773	646aa	FBpp0290600	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3LF78	-	-
Fmr1-RI	FBtr0335049	3752	639aa	FBpp0307053	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFN9	-	-
Fmr1-RA	FBtr0082197	3381	684aa	FBpp0081675	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NFU0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Fmr1-RJ	FBtr0347104	2985	681aa	FBpp0312465	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUS7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fmr1-RD	FBtr0082199	2967	681aa	FBpp0081677	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUS7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fmr1-RK	FBtr0347105	2896	681aa	FBpp0312466	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUS7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fmr1-RB	FBtr0082196	2266	529aa	FBpp0081674	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3G0S3 B3G0S8 B3G0T0	-	-
Fmr1-RH	FBtr0335048	2266	577aa	FBpp0307052	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGP6	-	-

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Summary

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