Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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DB built by FlyBase

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Gene: CG9650 FBgn0029939

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Location

Primary_assembly X: 7,137,723-7,241,932 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 64 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9650-RK	FBtr0474234	5755	1254aa	FBpp0423187	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A499JF18	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG9650-RI	FBtr0309030	6934	1207aa	FBpp0301059	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YJL2 G2J654 Q494J4 R9PY46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9650-RG	FBtr0301240	6154	1209aa	FBpp0290458	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV12	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9650-RL	FBtr0474235	5755	1213aa	FBpp0423188	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV11 B4YWD6 C7LA65	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG9650-RJ	FBtr0339815	5637	1140aa	FBpp0308848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GPJ3 F6JBF5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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