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DB built by FlyBase

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Gene: Lrp4 FBgn0030706

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Description

LDL receptor related protein 4

Gene Synonyms

Location

Primary_assembly X: 15,910,870-15,921,013 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 41 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lrp4-RB	FBtr0074125	7002	2009aa	FBpp0073931	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961N3 Q9VXM0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Lrp4-RC	FBtr0301666	7442	2008aa	FBpp0290880	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X533	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lrp4-RD	FBtr0340309	7168	2008aa	FBpp0309270	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X533	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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