Summary
- Splice variants
- Transcript comparison
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Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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Genetic Variation
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DB built by FlyBase

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Gene: d4 FBgn0033015

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Description

d4

Gene Synonyms

Location

Primary_assembly 2R: 5,259,004-5,295,965 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 20 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
d4-RA	FBtr0086082	1767	497aa	FBpp0085418	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K3G5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
d4-RB	FBtr0111115	1850	339aa	FBpp0110407	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E9P4	-	-
d4-RD	FBtr0335258	1764	496aa	FBpp0307242	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEC3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
d4-RC	FBtr0086083	1761	495aa	FBpp0085419	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z6E6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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