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- Splice variants
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: ckn FBgn0033987

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Description

caskin

Gene Synonyms

Location

Primary_assembly 2R: 14,963,292-14,980,795 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 59 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ckn-RE	FBtr0345946	4568	924aa	FBpp0311860	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQG5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ckn-RC	FBtr0087409	4357	924aa	FBpp0086540	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQG5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ckn-RD	FBtr0339987	4120	845aa	FBpp0309008	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFD7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ckn-RB	FBtr0087411	4039	924aa	FBpp0086542	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQG5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ckn-RF	FBtr0345947	3165	642aa	FBpp0311861	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF60	-	-

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Summary

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