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DB built by FlyBase

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Gene: nahoda FBgn0034797

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Description

nahoda

Gene Synonyms

Location

Primary_assembly 2R: 22,896,174-22,916,719 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 69 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nahoda-RA	FBtr0071942	5535	1335aa	FBpp0071853	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W1X5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
nahoda-RC	FBtr0304795	5866	1148aa	FBpp0293335	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7Z1 D3DML0 Q9GP66	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
nahoda-RB	FBtr0071943	5067	1335aa	FBpp0071854	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SXH6 Q9GP66 Q9W1X5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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