Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: sona FBgn0034903

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Description

sol narae

Gene Synonyms

Location

Primary_assembly 2R: 23,753,477-23,798,395 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 84 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sona-RC	FBtr0290120	5497	1102aa	FBpp0288559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZP6 C7LAH4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
sona-RE	FBtr0310329	4642	896aa	FBpp0302012	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2MGN5 Q8MT72	-	-
sona-RD	FBtr0310328	4388	913aa	FBpp0302011	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFG8	-	-
sona-RA	FBtr0100329	3588	639aa	FBpp0072001	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W1J9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
sona-RF	FBtr0310330	3585	638aa	FBpp0302013	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGD6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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