Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Molecular interactions
Regulation
External references
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ID History
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DB built by FlyBase

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Gene: CG9380 FBgn0035094

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Gene Synonyms

Location

Primary_assembly 2R: 25,183,628-25,255,318 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants) and 12 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9380-RG	FBtr0333173	2668	850aa	FBpp0305376	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8V8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9380-RF	FBtr0333172	3550	840aa	FBpp0305375	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MLN4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG9380-RE	FBtr0333171	2989	840aa	FBpp0305374	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PVB1 C0PVB5 Q6NP37 Q8MLN4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG9380-RD	FBtr0333170	2745	840aa	FBpp0305373	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MLN4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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