Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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- Orthologues
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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Genetic Variation
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DB built by FlyBase

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Gene: frm FBgn0035612

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Description

farmer

Gene Synonyms

Location

Primary_assembly 3L: 5,538,411-5,551,159 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 10 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
frm-RH	FBtr0273231	4234	1180aa	FBpp0271739	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
frm-RE	FBtr0113144	3580	652aa	FBpp0112057	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86NR7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
frm-RC	FBtr0077139	3482	682aa	FBpp0076845	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRM2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
frm-RB	FBtr0077140	3441	682aa	FBpp0076846	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRM2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
frm-RJ	FBtr0273233	3171	752aa	FBpp0271741	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B7	-	-
frm-RI	FBtr0273232	2992	766aa	FBpp0271740	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0B8	-	-
frm-RD	FBtr0077138	2428	268aa	FBpp0076844	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T018	-	-
frm-RA	FBtr0077137	2212	268aa	FBpp0076843	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T018	-	-
frm-RG	FBtr0113146	676	53aa	FBpp0112059	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNL3	-	-
frm-RK	FBtr0273234	447	53aa	FBpp0271742	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNL3	-	-

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Summary

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