Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG9674 FBgn0036663

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Gene Synonyms

Location

Primary_assembly 3L: 16,787,573-16,807,731 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 78 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9674-RF	FBtr0305916	7465	2115aa	FBpp0297083	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFH8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG9674-RI	FBtr0345074	8183	1164aa	FBpp0311304	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU8	-	-
CG9674-RD	FBtr0075344	7543	2114aa	FBpp0075103	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VVA4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG9674-RG	FBtr0333608	7436	2115aa	FBpp0305785	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFH8 Q7KUQ2 Q86PB9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG9674-RE	FBtr0305915	7282	1164aa	FBpp0297082	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU8	-	-
CG9674-RH	FBtr0333609	7274	1164aa	FBpp0305786	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU8	-	-
CG9674-RA	FBtr0075341	6757	2114aa	FBpp0075100	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VVA4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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