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DB built by FlyBase

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Gene: Whamy FBgn0037750

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Description

WHAMM and JMY related

Gene Synonyms

Location

Primary_assembly 3R: 9,771,795-9,774,419 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 7 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Whamy-RB	FBtr0110789	2175	630aa	FBpp0110086	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI93	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Whamy-RE	FBtr0334689	2082	596aa	FBpp0306747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH08	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Whamy-RD	FBtr0334688	2073	596aa	FBpp0306746	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH08	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Whamy-RA	FBtr0082159	1841	514aa	FBpp0081637	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SYK0 Q9VH71	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Whamy-RC	FBtr0334687	1832	514aa	FBpp0306745	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VH71	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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