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DB built by FlyBase

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Gene: Cap-H2 FBgn0037831

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Description

Chromosome associated protein H2

Gene Synonyms

Location

Primary_assembly 3R: 10,761,310-10,766,756 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Cap-H2-RE	FBtr0301310	4015	960aa	FBpp0290525	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU87 Q8INL2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Cap-H2-RG	FBtr0302571	4012	959aa	FBpp0291727	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0C4DHE3 C7LAG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cap-H2-RF	FBtr0301311	3976	947aa	FBpp0290526	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VGX5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cap-H2-RD	FBtr0082273	2933	699aa	FBpp0081750	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IHA6	-	-

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Summary

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