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DB built by FlyBase

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Gene: CG7675 FBgn0038610

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Gene Synonyms

Location

Primary_assembly 3R: 18,378,124-18,381,178 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 105 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG7675-RB	FBtr0083582	1272	336aa	FBpp0083003	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQ98 Q9VE80	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG7675-RD	FBtr0344550	1224	336aa	FBpp0310903	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE80	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG7675-RA	FBtr0083581	1130	287aa	FBpp0083002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0J5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG7675-RE	FBtr0344551	1101	287aa	FBpp0310904	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0J5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG7675-RC	FBtr0083583	1082	287aa	FBpp0083004	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0J5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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