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- Splice variants
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DB built by FlyBase

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Gene: subdued FBgn0038721

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Description

subdued

Gene Synonyms

Location

Primary_assembly 3R: 19,633,418-19,642,722 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 81 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
subdued-RD	FBtr0302492	4118	1099aa	FBpp0291654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCY1 B8A3Y5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
subdued-RA	FBtr0083805	4046	1075aa	FBpp0083215	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86P24 Q9VDV4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
subdued-RF	FBtr0334922	3603	950aa	FBpp0306942	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGH4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
subdued-RB	FBtr0083806	3531	926aa	FBpp0083216	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN71	-	-
subdued-RE	FBtr0334921	3504	926aa	FBpp0306941	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN71	-	-

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Summary

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