Summary
- Splice variants
- Transcript comparison
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG11168 FBgn0039249

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Gene Synonyms

Location

Primary_assembly 3R: 24,918,106-24,922,385 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 26 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG11168-RA	FBtr0084715	2980	863aa	FBpp0084091	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC09	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG11168-RC	FBtr0306089	3249	332aa	FBpp0297226	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIW0	-	-
CG11168-RD	FBtr0337009	2945	863aa	FBpp0307938	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95T22 Q9VC09	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG11168-RE	FBtr0337010	2903	849aa	FBpp0307939	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH07 C0PUY1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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