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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Structural variants
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DB built by FlyBase

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Gene: CG12071 FBgn0039808

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Location

Primary_assembly 3R: 30,877,084-30,881,027 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12071-RE	FBtr0344716	2640	581aa	FBpp0311049	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA29	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG12071-RF	FBtr0346757	2640	338aa	FBpp0312354	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV33 F3YDM4 Q7K356	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG12071-RD	FBtr0344715	2155	581aa	FBpp0311048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA29	-	-
CG12071-RG	FBtr0346758	2155	338aa	FBpp0312355	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV33	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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