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DB built by FlyBase

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Gene: kat80 FBgn0040207

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Description

katanin 80

Gene Synonyms

Location

Primary_assembly X: 16,267,007-16,276,180 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants) and 79 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
kat80-RA	FBtr0074247	3285	819aa	FBpp0074026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KHS0 Q8SXM2 Q9NHF0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
kat80-RC	FBtr0340443	3282	818aa	FBpp0309385	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JKM9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
kat80-RB	FBtr0074246	3186	819aa	FBpp0074025	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KHS0	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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