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DB built by FlyBase

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Gene: MTF-1 FBgn0040305

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Description

Metal response element-binding Transcription Factor-1

Gene Synonyms

Location

Primary_assembly 3L: 9,430,312-9,439,490 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 47 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
MTF-1-RC	FBtr0113322	4020	1006aa	FBpp0112234	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNP3 Q1LZ06 Q494H3 Q95TF7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
MTF-1-RD	FBtr0113323	3872	570aa	FBpp0112235	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQC5	-	-
MTF-1-RG	FBtr0344237	3523	570aa	FBpp0310641	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQC5	-	-
MTF-1-RA	FBtr0076459	3375	791aa	FBpp0076187	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GRX2 Q9NFS1 Q9VSY7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
MTF-1-RB	FBtr0076460	3272	570aa	FBpp0076188	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQC5	-	-
MTF-1-RF	FBtr0344236	3182	822aa	FBpp0310640	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCQ6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
MTF-1-RE	FBtr0113324	2812	570aa	FBpp0112236	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQC5	-	-

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Summary

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