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DB built by FlyBase

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Gene: tmod FBgn0082582

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Description

tropomodulin

Gene Synonyms

Location

Primary_assembly 3R: 30,532,607-30,578,905 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 18 transcripts (splice variants) and 85 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
tmod-RN	FBtr0306686	2699	567aa	FBpp0297625	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6N4 Q6IIZ8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
tmod-RP	FBtr0336446	4701	438aa	FBpp0307552	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHF2	-	-
tmod-RO	FBtr0306687	3484	424aa	FBpp0297626	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAH8	-	-
tmod-RK	FBtr0302600	3232	424aa	FBpp0291756	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAH8	-	-
tmod-RG	FBtr0113483	3192	526aa	FBpp0112393	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JRH3 Q6IDG5	-	-
tmod-RQ	FBtr0336447	3182	454aa	FBpp0307553	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHW6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
tmod-RI	FBtr0302111	3000	439aa	FBpp0291321	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C8VV00 Q9VA59	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
tmod-RD	FBtr0085659	2906	439aa	FBpp0085021	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA59	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
tmod-RF	FBtr0085660	2770	439aa	FBpp0085022	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA59	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
tmod-RJ	FBtr0302112	2753	409aa	FBpp0291322	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA58	-	-
tmod-RH	FBtr0302110	2717	372aa	FBpp0291320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ21	-	-
tmod-RC	FBtr0085661	2716	409aa	FBpp0085023	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA58	-	-
tmod-RE	FBtr0085658	2685	439aa	FBpp0085020	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA59	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
tmod-RL	FBtr0302601	2662	439aa	FBpp0291757	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA59	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
tmod-RR	FBtr0479778	2614	526aa	FBpp0428111	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EEH6	-	-
tmod-RA	FBtr0085662	2537	367aa	FBpp0085024	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6TP61 O46231	-	-
tmod-RB	FBtr0085663	2508	403aa	FBpp0085025	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA56	-	-
tmod-RM	FBtr0306685	2299	449aa	FBpp0297624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7R6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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