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DB built by FlyBase

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Gene: NaCP60E FBgn0085434

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Description

Na channel protein 60E

Gene Synonyms

Location

Primary_assembly 2R: 24,891,614-24,921,677 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 10 transcripts (splice variants), 97 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
NaCP60E-RM	FBtr0330240	11368	2896aa	FBpp0303273	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFH8 A8E6M2 D6W4K7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
NaCP60E-RJ	FBtr0308345	12929	2806aa	FBpp0300664	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K814	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
NaCP60E-RN	FBtr0333815	12573	934aa	FBpp0305949	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGE9	-	-
NaCP60E-RO	FBtr0333816	12475	366aa	FBpp0305950	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG05	-	-
NaCP60E-RG	FBtr0308342	11631	2844aa	FBpp0300661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0Y8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
NaCP60E-RL	FBtr0308347	11512	2608aa	FBpp0300666	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7I8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
NaCP60E-RP	FBtr0333817	11475	2407aa	FBpp0305951	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF50	-	-
NaCP60E-RH	FBtr0308343	11368	2844aa	FBpp0300662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0Y8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
NaCP60E-RK	FBtr0308346	11335	2833aa	FBpp0300665	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K887	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
NaCP60E-RI	FBtr0308344	10469	2712aa	FBpp0300663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K8B5 C3KGK5	-	-

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Summary

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