Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: alph FBgn0086361

.

Description

alphabet

Gene Synonyms

Location

Primary_assembly 3R: 29,591,831-29,617,157 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 61 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
alph-RE	FBtr0085444	1683	374aa	FBpp0084810	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961C5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
alph-RB	FBtr0085443	2712	371aa	FBpp0084809	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMK7	-	-
alph-RA	FBtr0085442	2576	368aa	FBpp0084808	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VAK1	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
alph-RF	FBtr0309241	2504	332aa	FBpp0301180	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7Q3 D6W4T6	-	-
alph-RD	FBtr0085445	2417	368aa	FBpp0084811	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VAK1	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
alph-RC	FBtr0085446	2341	368aa	FBpp0084812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VAK1	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

.

Summary

.

.