Summary
- Splice variants
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DB built by FlyBase

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Gene: PMCA FBgn0259214

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Description

plasma membrane calcium ATPase

Gene Synonyms

Location

Primary_assembly 4: 328,193-358,917 reverse strand.

BDGP6.46:AE014135.4

About this gene

This gene has 11 transcripts (splice variants), 89 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PMCA-RS	FBtr0304050	5939	1255aa	FBpp0293013	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DP9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
PMCA-RJ	FBtr0300555	4740	1255aa	FBpp0289782	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DP9	-	-
PMCA-RQ	FBtr0304048	4701	1187aa	FBpp0293011	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6EK17	-	-
PMCA-RM	FBtr0300558	4600	1255aa	FBpp0289785	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DP9	-	-
PMCA-RI	FBtr0300554	4135	1206aa	FBpp0289781	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V4C7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
PMCA-RO	FBtr0304046	4101	1206aa	FBpp0293009	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V4C7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
PMCA-RK	FBtr0300556	4066	1183aa	FBpp0289783	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DQ0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
PMCA-RR	FBtr0304049	4065	1210aa	FBpp0293012	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6EK18 Q6IIW9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
PMCA-RL	FBtr0300557	4053	1206aa	FBpp0289784	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V4C7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
PMCA-RP	FBtr0304047	4017	1194aa	FBpp0293010	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6EK15 Q1WWE3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
PMCA-RN	FBtr0300559	3857	1120aa	FBpp0289786	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DP8	-	-

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Summary

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