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DB built by FlyBase

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Gene: Pka-R1 FBgn0259243

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Description

Protein kinase, cAMP-dependent, regulatory subunit type 1

Gene Synonyms

Location

Primary_assembly 3L: 20,816,118-20,836,048 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 18 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pka-R1-RV	FBtr0302637	1648	464aa	FBpp0291777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QP41 M9MS76	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Pka-R1-RAA	FBtr0302641	3638	377aa	FBpp0291781	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRY3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pka-R1-RM	FBtr0300528	3635	376aa	FBpp0289755	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pka-R1-RAB	FBtr0302642	3580	377aa	FBpp0291782	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRY3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pka-R1-RP	FBtr0300530	3577	376aa	FBpp0289757	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pka-R1-RU	FBtr0300535	3570	376aa	FBpp0289762	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pka-R1-RO	FBtr0299893	3424	463aa	FBpp0289171	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V4J8 Q9VPA7	-	-
Pka-R1-RZ	FBtr0302640	3318	320aa	FBpp0291780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS37	-	-
Pka-R1-RR	FBtr0300532	3315	319aa	FBpp0289759	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Pka-R1-RX	FBtr0302639	3245	297aa	FBpp0291779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS72	-	-
Pka-R1-RAC	FBtr0302643	3243	377aa	FBpp0291783	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRY3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pka-R1-RN	FBtr0300529	3242	296aa	FBpp0289756	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Pka-R1-RT	FBtr0300534	3240	376aa	FBpp0289761	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pka-R1-RS	FBtr0300533	3068	296aa	FBpp0289760	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Pka-R1-RL	FBtr0299892	2867	376aa	FBpp0289170	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Pka-R1-RW	FBtr0302638	2426	322aa	FBpp0291778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H1UUF3	-	-
Pka-R1-RQ	FBtr0300531	2423	321aa	FBpp0289758	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Pka-R1-RK	FBtr0299891	2245	376aa	FBpp0289169	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P16905	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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