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DB built by FlyBase

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Gene: Jabba FBgn0259682

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Description

Jabba

Gene Synonyms

Location

Primary_assembly 2R: 18,757,074-18,761,082 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 8 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Jabba-RC	FBtr0299943	2029	560aa	FBpp0289220	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZK5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Jabba-RF	FBtr0304051	1925	537aa	FBpp0293014	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCT7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Jabba-RH	FBtr0330006	1667	388aa	FBpp0303041	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFV2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Jabba-RG	FBtr0304052	1663	438aa	FBpp0293015	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZK4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Jabba-RE	FBtr0299945	1628	438aa	FBpp0289222	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZK4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Jabba-RD	FBtr0299944	1622	367aa	FBpp0289221	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZK6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Jabba-RI	FBtr0333163	1567	406aa	FBpp0305366	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG78 K4GUH7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Jabba-RB	FBtr0299942	1323	320aa	FBpp0289219	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1Q6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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