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DB built by FlyBase

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Gene: CG42390 FBgn0259736

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Gene Synonyms

Location

Primary_assembly 3R: 22,120,061-22,133,367 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42390-RF	FBtr0479749	5497	1544aa	FBpp0428092	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EFV6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG42390-RE	FBtr0336711	5439	1483aa	FBpp0307692	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VD46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42390-RB	FBtr0300006	5314	1483aa	FBpp0289283	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D1Z370 Q9VD46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42390-RD	FBtr0300008	5170	1435aa	FBpp0289285	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KS66 Q960N1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42390-RG	FBtr0479762	4707	1354aa	FBpp0428105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EGE0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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