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DB built by FlyBase

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Gene: vlc FBgn0259978

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Description

vulcan

Gene Synonyms

Location

Primary_assembly 2R: 5,702,112-5,705,439 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 8 transcripts (splice variants), 58 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vlc-RE	FBtr0300502	2626	605aa	FBpp0289729	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3QTI5 Q7K1T1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RF	FBtr0300503	2541	605aa	FBpp0289730	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RA	FBtr0086039	2531	605aa	FBpp0085375	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RG	FBtr0307530	2487	605aa	FBpp0300185	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RC	FBtr0086041	2454	605aa	FBpp0085377	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RI	FBtr0307532	2425	605aa	FBpp0300187	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vlc-RB	FBtr0086040	2388	583aa	FBpp0085376	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3QTB9 A1Z6H4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vlc-RH	FBtr0307531	2369	605aa	FBpp0300186	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K1T1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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